PHATRDRAFT_44362 leucine-rich repeat containing protein (COG4886)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44362	chr_4	leucine-rich repeat containing protein (COG4886)	334927	338357	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0062

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0050	0.33	0.032 2400

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-C3H1 superfamily		Putative zinc-finger domain; This domain is conserved in fungi and might be a zinc-finger domain as...	-	39.9195	0.000275164	294 - 315	superfamily	192649
LRR_4 superfamily		Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number...	-	38.2348	0.00128555	1014 - 1053	superfamily	257306
LRR_4 superfamily		Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number...	-	38.2348	0.00128555	1014 - 1053	superfamily	257306
COG4886		Leucine-rich repeat (LRR) protein [Function unknown]	-	56.1298	2.20E-08	955 - 1081	multi-dom	227223

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	244751	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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