PHATRDRAFT_45319 elongation factor tu gtp binding domain containingisoform cra_a (PTZ00416)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45319 chr_6 elongation factor tu gtp binding domain containingisoform cra_a (PTZ00416) 829211 832318 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0208

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (... cl02789 298.819 1.97E-94 700 - 876 specific 238840
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 298.819 1.97E-94 700 - 876 superfamily 243187
eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small... cl02785 131.214 1.06E-35 873 - 952 specific 239765
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 131.214 1.06E-35 873 - 952 superfamily 261447
eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion... cl02787 125.769 1.42E-33 513 - 606 specific 239757
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 125.769 1.42E-33 513 - 606 superfamily 261449
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 239.092 2.15E-72 140 - 348 superfamily 266525
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 49.3495 2.68E-07 622 - 698 superfamily 258632
PTZ00416 elongation factor 2; Provisional - 681.004 0 131 - 998 multi-dom 240409

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26806 Not available 258637 323067 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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