PHATRDRAFT_3137 sorting nexin 1 (BAR_SNX)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_3137	chr_7	sorting nexin 1 (BAR_SNX)	656838	658013	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0393

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
BAR_SNX		The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins; BAR domains are dimerization, lipid binding...	cl12013	179.859	6.93E-54	178 - 390	specific	153280
BAR superfamily		The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects...	-	179.859	6.93E-54	178 - 390	superfamily	264507
PX_domain superfamily		The Phox Homology domain, a phosphoinositide binding module; The PX domain is a phosphoinositide (...	-	153.889	1.89E-45	1 - 118	superfamily	261344

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
34620		Not available	167152	319689	431836	Cre06.g281050.t1.2	AT5G06140.1	563523

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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