PHATRDRAFT_12586 ribosomal large subunit pseudouridine synthase d (RluA)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12586	chr_9	ribosomal large subunit pseudouridine synthase d (RluA)	517492	518139	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0107

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0024	0.42	0.018 2.9

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth_RluCD_like		Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and...	cl00130	157.884	5.48E-48	8 - 201	specific	211346
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	157.884	5.48E-48	8 - 201	superfamily	260207
RluA		Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	-	174.036	3.97E-53	1 - 215	multi-dom	223638

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT3G19440.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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