19928 (RL20) Ribosomal_L20
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19928 chr_1 (RL20) Ribosomal_L20 2399461 2399811 + Ribosomal_L20

Synonyms

NCBI ID Ensembl Genomes exon ID
7449054 Thaps19928.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0328

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9341

41655

Chloroa_b-bind
0.9308

1676

hypothetical protein
0.9306

30701

PRK05279
0.9261

5270

Methyltransf_16 superfamily
0.922

3539

hypothetical protein
0.9193

8498

Ribosomal_L9_N
0.919

8015

hypothetical protein
0.9188

6997

hypothetical protein
0.918

19826

LSm1
0.9151

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L20 Ribosomal protein L20; The ribosomal protein family L20 contains members from eubacteria, as well... cl00393 138.001 8.01E-43 5 - 103 specific 197305
Ribosomal_L20 superfamily Ribosomal protein L20; The ribosomal protein family L20 contains members from eubacteria, as well... - 138.001 8.01E-43 5 - 103 superfamily 260401

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16511 PHATRDRAFT_16511 182726 189226 354743 Cre01.g052350.t1.1 AT1G16740.1 284863

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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