2018 HAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2018	chr_1	HA	2963633	2965280	+	HA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445473	Thaps2018.2, Thaps2018.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0243

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0079	0.38	0.0017 0.0000015

Most Highly Correlated Transcripts

8446 hypothetical protein 0.9067	31145 COG4581 0.9048	31690 SpoVK 0.8913	1205 PKc_like superfamily 0.8854	9577 Trypsin_2 0.8762	4290 hypothetical protein 0.8739
31932 hypothetical protein 0.8734	9017 hypothetical protein 0.872	21176 FMO-like 0.8712	261719 AdoMet_MTases superfamily 0.8703

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	59.6265	2.80E-11	361 - 420	superfamily	251968
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	59.6265	2.80E-11	361 - 420	superfamily	251968

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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