20420 rpmA
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
20420 chr_3 rpmA 865828 866349 + rpmA
NCBI ID Ensembl Genomes exon ID
7448726 Thaps20420.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427
GRX_PICOT_like
0.9087
Cyt_c_Oxidase_VIb
0.9075
hypothetical protein
0.9046
rplO
0.9019
PRK05279
0.8993
0.8985
IGPD superfamily
0.8954
hypothetical protein
0.8943
IF4E
0.8906
hypothetical protein
0.8898
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
rpmA 50S ribosomal protein L27; Validated cl00359 125.14 2.95E-37 80 - 162 specific 235464
Ribosomal_L27 superfamily Ribosomal L27 protein; Ribosomal L27 protein. - 125.14 2.95E-37 80 - 162 superfamily 260380
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11799 PHATRDRAFT_11799 165357 306419 444249 Cre06.g300800.t1.2 AT5G40950.1 288786
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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