20469 PLN00032
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20469 chr_5 PLN00032 2226166 2226749 + PLN00032

Synonyms

NCBI ID Ensembl Genomes exon ID
7442311 Thaps20469.2, Thaps20469.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0056

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

9442

PTZ00146
0.8491

26686

WD40
0.8014

24414

(MAP2) PTZ00053
0.7631

17145

WBS_methylT
0.7625

3314

hypothetical protein
0.7582

3416

TPR
0.7559

22635

SIK1
0.7542

25484

hypothetical protein
0.7542

24904

PIN_SF superfamily
0.7537

23887

hypothetical protein
0.75

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00032 DNA-directed RNA polymerase; Provisional cl00712 130.261 6.80E-41 1 - 64 specific 215034
RNA_pol_N superfamily RNA polymerases N / 8 kDa subunit; RNA polymerases N / 8 kDa subunit. - 130.261 6.80E-41 1 - 64 superfamily 242042

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10821 PHATRDRAFT_10821 193447 201980 74809 Cre13.g571650.t1.2 AT1G61700.1 286504

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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