10403 MscS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10403 chr_16a MscS 243404 245039 - MscS

Synonyms

NCBI ID Ensembl Genomes exon ID
7442517 Thaps10403.3, Thaps10403.2, Thaps10403.1, Thaps10403.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0250

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

7842

(Tp_AP2-EREBP11) regulator [Rayko]
0.8725

262573

G_glu_transpept
0.8326

8982

Reprolysin_3
0.8321

8384

hypothetical protein
0.8314

2035

hypothetical protein
0.8307

3331

Bac_rhamnosid superfamily
0.8301

8459

hypothetical protein
0.83

20971

hypothetical protein
0.8296

25874

hypothetical protein
0.8287

4047

hypothetical protein
0.8237

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MS_channel superfamily Mechanosensitive ion channel; Two members of this protein family from M. jannaschii have been... - 89.1778 1.24E-20 249 - 450 superfamily 250229
MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] - 98.0689 4.74E-23 200 - 449 multi-dom 223740

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016020 -

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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