21193 UBL
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21193 chr_2 UBL 567012 568356 + UBL

Synonyms

NCBI ID Ensembl Genomes exon ID
7448683 Thaps21193.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0111

Most Highly Correlated Transcripts

30701

PRK05279
0.9232

31885

S_TKc
0.9086

25386

hypothetical protein
0.9081

24373

hypothetical protein
0.9067

39864

DEXDc superfamily
0.901

3032

CDC50
0.9006

3768

hypothetical protein
0.8977

821

(VPS4) AAA
0.8975

32468

STKc_CDC2L1
0.8924

41583

WD40
0.8904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBL Ubiquitin-like domain of UBL; UBLs function by remodeling the surface of their target proteins,... cl00155 65.7514 1.24E-13 73 - 133 specific 176364
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 65.7514 1.24E-13 73 - 133 superfamily 260222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44545 PHATRDRAFT_44545 181450 203959 Not available Not available Not available 468224

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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