39864 DEXDc superfamilyThalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
39864	chr_3	DEXDc superfamily	870941	872355	+	DEXDc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444761	Thaps39864.2, Thaps39864.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0111

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0042	0.43

Most Highly Correlated Transcripts

31885 S_TKc 0.9253	25386 hypothetical protein 0.9219	26470 (GFS1) PLN02725 0.9215	30701 PRK05279 0.9063	39901 (PGK1) Phosphoglycerate_kinase 0.9049	19826 LSm1 0.904
5105 hypothetical protein 0.9019	21193 UBL 0.901	268059 hypothetical protein 0.8991	25033 tRNA_bind_EMAP-II_like 0.899

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	120.806	4.71E-33	201 - 337	superfamily	238034
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	120.806	4.71E-33	201 - 337	superfamily	238034
DEXDc superfamily	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	198.863	1.18E-61	1 - 188	superfamily	266587
DEXDc	DEAD-like helicases superfamily; DEAD-like helicases superfamily.	-	132.231	2.33E-36	1 - 197	multi-dom	214692

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_1990	PHATRDRAFT_1990	Not available	Not available	Not available	Cre06.g306850.t1.2	AT3G53110.1	548480

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0008026

ATP-dependent helicase activity

Details:

Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0004386

helicase activity

Details:

Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details:

Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.

GO Category:

GO:0004787

thiamine-pyrophosphatase activity

Details:

Catalysis of the reaction: TDP + H2O = TMP + phosphate.

GO Category:

GO:0008722

Details:

GO Category:

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details:

Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.

GO Category:

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details:

Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.

GO Category:

GO:0008828

dATP pyrophosphohydrolase activity

Details:

Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.

GO Category:

GO:0016462

pyrophosphatase activity

Details:

Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.

GO Category:

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details:

Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

GO Category:

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details:

Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.

GO Category:

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details:

Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.

GO Category:

39864 DEXDc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003676

GO:0005524

GO:0008026

GO:0004386

GO:0000810

GO:0004787

GO:0008722

GO:0008758

GO:0008796

GO:0008828

GO:0016462

GO:0016818

GO:0019176

GO:0019177

Add comment