2130 BRF1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2130	chr_2	BRF1 superfamily	249047	250318	+	BRF1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442207	Thaps2130.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0084

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.9115	267979 HCO3_cotransp superfamily 0.904	40200 TRX_reduct 0.9039	10419 hypothetical protein 0.9036	263436 P4Hc 0.8988	37100 Zn-ribbon_RPC11 0.898
4674 zf-DHHC 0.8962	23550 hypothetical protein 0.8959	30701 PRK05279 0.8948	4757 Leo1 0.8932

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
BRF1 superfamily		Brf1-like TBP-binding domain; This region covers both the Brf homology II and III regions. This...	-	61.1228	9.04E-12	294 - 397	superfamily	254398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_30925	PHATRDRAFT_30925	Not available	14785	Not available	Not available	AT2G01280.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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