21967 CCT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21967 chr_3 CCT 1977485 1979622 - CCT

Synonyms

NCBI ID Ensembl Genomes exon ID
7452071 Thaps21967.2, Thaps21967.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0034

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0198
 0.40

Most Highly Correlated Transcripts

bd1851

(bd1851) NA
0.8

264583

(PYK4) PykF
0.7912

268398

PRK04173
0.7816

1913

AAA
0.7786

31265

(CAT1_1) Mito_carr
0.7732

6935

(Tp_HSF_1.3h) HSF_DNA-bind superfamily
0.7725

21419

hypothetical protein
0.7706

bd737

(bd737) NA
0.7701

ThpsCp134

(rpl34) ribosomal protein L34
0.7665

9566

hypothetical protein
0.7661

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CCT superfamily CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids... - 68.016 2.11E-14 405 - 448 superfamily 203407
CCT superfamily CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids... - 68.016 2.11E-14 405 - 448 superfamily 203407

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_43850 PHATR_43850 250436 249347 Not available Not available Not available 482405

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004308 -

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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