268398 PRK04173
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268398 chr_2 PRK04173 2602441 2604467 - PRK04173

Synonyms

NCBI ID Ensembl Genomes exon ID
7452133 Thaps268398.1, Thaps268398.3, Thaps268398.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

261633

(CTS2) cysS
0.9116

8164

hypothetical protein
0.9053

40034

thrS
0.9045

37277

tig
0.903

261684

(LEUS) PLN02563
0.902

23462

hypothetical protein
0.8991

38248

(ALATS1) PLN02900
0.8923

39606

PRK05431
0.884

24832

hypothetical protein
0.8803

40028

PLN02286
0.8777

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer... cl00268 317.61 8.27E-105 81 - 415 specific 238397
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 317.61 8.27E-105 81 - 415 superfamily 260313
GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS... cl00266 180.831 2.57E-54 415 - 537 specific 238435
HGTP_anticodon superfamily HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl... - 180.831 2.57E-54 415 - 537 superfamily 260312
PRK04173 glycyl-tRNA synthetase; Provisional - 739.635 0 77 - 534 multi-dom 235240

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50885 PHATRDRAFT_50885 230882 239754 Not available Not available Not available 253949

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004820 GO:0006426 GO:0006412 GO:0009345 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004820

glycine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).
GO Category: 
MF

GO:0006426

glycyl-tRNA aminoacylation

Details: 
The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0009345

glycine-tRNA ligase complex

Details: 
A multimeric enzyme complex which, in bacteria, is usually a tetramer of two alpha and two beta chains and in eukaryotes, is usually a homodimer. Functions in the ligation of glycine and tRNA(Gly) to form glycyl-tRNA(Gly).
GO Category: 
CC

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