22128 DENNThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22128	chr_4	DENN	431046	434667	+	DENN

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447444	Thaps22128.6, Thaps22128.4, Thaps22128.2, Thaps22128.5, Thaps22128.1, Thaps22128.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0405

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9464	22265 hypothetical protein 0.9333	25619 hypothetical protein 0.9322	268640 Glyco_hydro_47 0.9266	24174 DUF1336 superfamily 0.9203	3493 hypothetical protein 0.9202
2742 DUF1336 superfamily 0.92	23051 hypothetical protein 0.9169	22138 Sec3_C superfamily 0.9154	23560 hypothetical protein 0.9149

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DENN		Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN; The DENN...	cl11519	113.445	2.60E-28	307 - 441	specific	214823
DENN superfamily		DENN (AEX-3) domain; DENN (after differentially expressed in neoplastic vs normal cells) is a...	-	113.445	2.60E-28	307 - 441	superfamily	264408

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre12.g511600.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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