22372 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22372 chr_4 HMGB-UBF_HMG-box 1620198 1621306 - HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7451905 Thaps22372.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0033

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

bd388

(bd388) COG3899
0.8703

bd643

(bd643) NA
0.8155

bd737

(bd737) NA
0.765

5880

hypothetical protein
0.751

bd943

(bd943) NA
0.7481

bd738

(bd738) NA
0.7478

10229

hypothetical protein
0.7476

bd1801

(bd1801) NA
0.7401

34125

CdCA1
0.7302

bd735

(bd735) NA
0.7292

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 58.7933 2.73E-11 84 - 167 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 58.7933 2.73E-11 84 - 167 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44432 PHATRDRAFT_44432 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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