22487 COG5222
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22487 chr_4 COG5222 2253257 2255886 - COG5222

Synonyms

NCBI ID Ensembl Genomes exon ID
7452255 Thaps22487.2, Thaps22487.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0468

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

bd1948

(bd1948) NA
0.8764

3196

hypothetical protein
0.8548

25879

TopA
0.8517

6584

PWI superfamily
0.8458

24434

hypothetical protein
0.8409

36301

HMG-box
0.8332

24852

hypothetical protein
0.8295

24955

hypothetical protein
0.8288

22355

hypothetical protein
0.8282

23095

UBCc
0.8281

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DWNN superfamily DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of... - 79.5806 6.79E-18 5 - 81 superfamily 149746
DWNN superfamily DWNN domain; DWNN is a ubiquitin like domain found at the N terminus of the RBBP6 family of... - 79.5806 6.79E-18 5 - 81 superfamily 149746
COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] - 119.466 6.85E-29 1 - 377 multi-dom 227547

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46285 PHATRDRAFT_46285 Not available Not available Not available Not available AT5G47430.1 313706

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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