36301 HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36301 chr_9 HMG-box 693775 694980 + HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7448077 Thaps36301.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0333

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

4047

hypothetical protein
0.9129

268194

(Tp_Myb4R1b) SANT
0.9075

23096

hypothetical protein
0.8962

25417

hypothetical protein
0.896

24852

hypothetical protein
0.8895

6357

hypothetical protein
0.8831

3196

hypothetical protein
0.8786

10533

hypothetical protein
0.8774

25161

hypothetical protein
0.8717

22355

hypothetical protein
0.8717

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... cl00082 69.1847 7.13E-15 273 - 337 specific 238037
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 69.1847 7.13E-15 273 - 337 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6025 PHATRDRAFT_6025 189563 115181 Not available Not available Not available 288743

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

Add comment

Log in to post comments