22592 CBS_pair_10Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22592	chr_5	CBS_pair_10	401966	402804	+	CBS_pair_10

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449678	Thaps22592.2, Thaps22592.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0401

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0065	0.48	0.0000029 0.0000057

Most Highly Correlated Transcripts

18662 ADK 0.9475	16114 PLN02350 0.8881	37118 FeThRed_B 0.8844	268443 SAICAR_synt_Sc 0.8839	260925 nucleoside_deaminase 0.8834	19158 GRX_PICOT_like 0.8805
3348 hypothetical protein 0.8793	2660 hypothetical protein 0.879	11563 hypothetical protein 0.8773	37497 cysE 0.8728

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CBS_pair_10		The CBS domain, named after human CBS, is a small domain originally identified in cystathionine...	cl15354	128.386	7.81E-38	57 - 168	specific	239995
CBS_pair superfamily		The CBS domain, named after human CBS, is a small domain originally identified in cystathionine...	-	128.386	7.81E-38	57 - 168	superfamily	265675
COG0517		FOG: CBS domain [General function prediction only]	-	66.3409	1.76E-14	58 - 167	multi-dom	223591

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT5G10860.1	286413

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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