22692 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22692	chr_5	RING	955464	956953	-	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449623	Thaps22692.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0403

Most Highly Correlated Transcripts

261400 NA 0.9191	13448 Sec1 0.8952	3773 hypothetical protein 0.8874	38123 Arrestin_N superfamily 0.8842	262467 MFS 0.877	32468 STKc_CDC2L1 0.8725
3204 hypothetical protein 0.8718	25535 hypothetical protein 0.8715	42646 PRK04342 0.8699	264533 (Tp_bZIP13) basic leucine zipper protein smilarity, DNA binding, transcription factor 0.8694

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	60.152	8.08E-12	351 - 396	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	60.152	8.08E-12	351 - 396	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49638	PHATRDRAFT_49638	186797	184478	458235	Not available	AT1G74410.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

Add comment

Log in to post comments