22808 SpoU_methylase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22808 chr_5 SpoU_methylase superfamily 1511459 1517595 - SpoU_methylase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448152 Thaps22808.4, Thaps22808.3, Thaps22808.2, Thaps22808.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

bd1828

(bd1828) NA
0.9367

260923

BcrAD_BadFG superfamily
0.9043

269966

(VTS1) PTZ00419
0.8823

26492

PRK05385
0.8722

40884

(RPA1) RNAP_I_RPA1_N
0.8692

269018

hypothetical protein
0.8644

269371

hypothetical protein
0.8634

30301

PLN03206
0.8603

2157

D123 superfamily
0.8537

24015

Urb2 superfamily
0.853

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 94.1132 1.39E-21 1792 - 1935 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8000 PHATRDRAFT_8000 181295 189360 Not available Cre01.g027350.t1.2 AT4G17610.1 495108

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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