269966 (VTS1) PTZ00419
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269966 chr_18 (VTS1) PTZ00419 697808 701727 + PTZ00419

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

40884

(RPA1) RNAP_I_RPA1_N
0.9262

22672

hypothetical protein
0.9221

6250

reductase
0.9199

262091

eukaryotic translation initiation factor 3, subunit 10
0.9174

bd1828

(bd1828) NA
0.9107

39022

COG2319
0.9081

21397

Nop52 superfamily
0.9062

39845

(DNA_TopoIV) PRK05560
0.9039

36434

DUF1253
0.9033

24015

Urb2 superfamily
0.9025

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ValRS_core catalytic core domain of valyl-tRNA synthetases; Valine amino-acyl tRNA synthetase (ValRS)... cl00015 569.187 0 38 - 648 specific 185677
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 569.187 0 38 - 648 superfamily 260139
Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases; This domain is found in valyl tRNA synthetases... cl12020 181.216 1.28E-52 648 - 791 specific 153416
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 181.216 1.28E-52 648 - 791 superfamily 264512
tRNA-synt_1_2 superfamily Leucyl-tRNA synthetase, Domain 2; This is a family of the conserved region of Leucine-tRNA ligase... - 69.8159 1.73E-13 228 - 329 superfamily 257918
PTZ00419 valyl-tRNA synthetase-like protein; Provisional - 1481.79 0 1 - 982 multi-dom 240411

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 314768

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0003779 GO:0004832 GO:0006438 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0003779

actin binding

Details: 
Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
GO Category: 
MF

GO:0004832

valine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+).
GO Category: 
MF

GO:0006438

valyl-tRNA aminoacylation

Details: 
The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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