22869 rad1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22869 chr_5 rad1 1841560 1853014 - rad1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0410

Most Highly Correlated Transcripts

8979

hypothetical protein
0.8776

4672

hypothetical protein
0.8766

263610

COG3899
0.8736

24063

COG3899
0.8665

23207

hypothetical protein
0.8663

12079

hypothetical protein
0.8655

10298

hypothetical protein
0.8625

24331

(Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily
0.8607

25078

hypothetical protein
0.8578

5763

ERCC4
0.8569

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ERCC4 ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an essential... cl10594 100.175 1.87E-23 2321 - 2451 specific 251501
ERCC4 superfamily ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an essential... - 100.175 1.87E-23 2321 - 2451 superfamily 264010
VPS9 Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It... cl19569 96.1164 1.89E-22 3022 - 3119 specific 251154
VPS9 superfamily Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It... - 96.1164 1.89E-22 3022 - 3119 superfamily 267922
RRP14 superfamily 60S ribosome biogenesis protein Rrp14; RRP14 is a family of nucleolar 60S ribosomal biogenesis... - 86.9833 1.31E-19 14 - 77 superfamily 259590
RRP14 superfamily 60S ribosome biogenesis protein Rrp14; RRP14 is a family of nucleolar 60S ribosomal biogenesis... - 86.9833 1.31E-19 14 - 77 superfamily 259590
rad1 DNA repair protein (rad1); All proteins in this family for which functions are known are components... - 513.976 1.12E-157 1664 - 2553 multi-dom 233041
Beta_propel Beta propeller domain; Members of this family comprise secreted bacterial proteins containing C-... - 251.441 4.45E-71 747 - 1352 multi-dom 255588

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30908 PHATRDRAFT_30908 265510 230429 457443 Cre06.g311400.t1.2 AT5G41150.1 327253

KEGG

KEGG description KEGG Pathway
Nucleotide excision repair map03420

GO Terms

GO:0003676 GO:0004518 GO:0006259 GO:0003910 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

GO:0003910

DNA ligase (ATP) activity

Details: 
Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 
MF

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