23336 SRP40_C superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23336 chr_7 SRP40_C superfamily 112071 114365 + SRP40_C superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446592 Thaps23336.1, Thaps23336.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

29018

NMD3
0.9585

22985

WD40 superfamily
0.9507

31047

Brix
0.9497

268130

hypothetical protein
0.9486

21397

Nop52 superfamily
0.946

23900

hypothetical protein
0.9452

31516

SIK1
0.9433

22499

TrmA
0.9367

21682

SrmB
0.9357

20985

COG5593
0.9347

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SRP40_C superfamily SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae... - 61.9134 6.27E-12 530 - 612 superfamily 191166

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50527 PHATRDRAFT_50527 251960 2290 Not available Not available Not available 559466

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004308 -

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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