22499 TrmA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22499 chr_4 TrmA 2337603 2339827 + TrmA

Synonyms

NCBI ID Ensembl Genomes exon ID
7452266 Thaps22499.3, Thaps22499.2, Thaps22499.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

21959

hypothetical protein
0.9425

24429

PRMT5 superfamily
0.9375

268880

WD40 superfamily
0.9368

23336

SRP40_C superfamily
0.9367

bd1876

(bd1876) NatB_MDM20 superfamily
0.936

2921

RRM_SF
0.9336

262699

YgdL_like
0.9325

22417

Sun
0.9311

36434

DUF1253
0.929

29018

NMD3
0.9288

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation,... - 63.103 8.23E-11 150 - 674 multi-dom 225174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47290 PHATRDRAFT_47290 253863 201563 Not available Not available AT3G27180.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000150 GO:0006310 -

GO:0000150

recombinase activity

Details: 
Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
GO Category: 
MF

GO:0006310

DNA recombination

Details: 
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
BP

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