23486 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23486	chr_7	LRR_RI superfamily	1056634	1057581	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447060	Thaps23486.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0491

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0115	0.37	35 250

Most Highly Correlated Transcripts

268366 Glyco_18 0.8053	bd1844 (bd1844) NA 0.7953	10311 hypothetical protein 0.7905	24415 hypothetical protein 0.7848	10313 hypothetical protein 0.7683	23899 hypothetical protein 0.7661
21661 hypothetical protein 0.7584	bd1749 (bd1749) NA 0.7532	8952 PTZ00295 0.7524	36889 S_TKc 0.7522

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	82.4033	1.12E-18	19 - 151	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	355832

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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