23596 TPRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23596	chr_7	TPR	1652386	1654627	+	TPR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447169	Thaps23596.2, Thaps23596.3, Thaps23596.1, Thaps23596.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0096

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0032	0.47	3.5 20000

Most Highly Correlated Transcripts

5161 hypothetical protein 0.85	21606 plant_peroxidase_like superfamily 0.8442	20821 SCP superfamily 0.8434	1316 hypothetical protein 0.8291	25075 hypothetical protein 0.8282	23813 hypothetical protein 0.8281
3108 hypothetical protein 0.817	23814 probable serine protease inhibitor 0.814	8274 hypothetical protein 0.8113	24383 hypothetical protein 0.8088

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	63.9384	1.96E-12	125 - 234	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	63.9384	1.96E-12	125 - 234	superfamily	238112

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	499947

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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