10791 ATS1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10791 chr_18 ATS1 120284 122253 + ATS1

Synonyms

NCBI ID Ensembl Genomes exon ID
7450934 Thaps10791.3, Thaps10791.4, Thaps10791.2, Thaps10791.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0105

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0056
 0.44

Most Highly Correlated Transcripts

25337

hypothetical protein
0.9109

22941

plant_peroxidase_like
0.8615

4082

hypothetical protein
0.8464

25098

hypothetical protein
0.8289

25060

hypothetical protein
0.8288

25061

hypothetical protein
0.8265

24566

hypothetical protein
0.8224

bd1806

(bd1806) AAT_I superfamily
0.8062

10497

hypothetical protein
0.8062

bd1813

(bd1813) NA
0.8036

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 108.772 1.24E-25 217 - 533 multi-dom 227511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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