23654 (Tp_AP2-EREBP6) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23654 chr_8 (Tp_AP2-EREBP6) regulator [Rayko] 45361 47703 - regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7452393 Thaps23654.4, Thaps23654.1, Thaps23654.2, Thaps23654.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0152

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0009
 0.42

Most Highly Correlated Transcripts

7359

(Tp_AP2-EREBP8) regulator [Rayko]
0.8873

bd457

(bd457) NA
0.8314

261176

Hydrolase_4 superfamily
0.8141

23782

hypothetical protein
0.7995

25005

hypothetical protein
0.7731

8227

hypothetical protein
0.7693

22153

DnaJ
0.7669

22661

hypothetical protein
0.7655

29057

P-ATPase-V
0.7597

3924

hypothetical protein
0.7582

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0003700 GO:0005634 GO:0006355 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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