23830 (GCD1) GCDThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23830	chr_8	(GCD1) GCD	962001	963605	-	GCD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449860	Thaps23830.1, Thaps23830.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0144

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0180	0.31	110000 16

Most Highly Correlated Transcripts

bd410 (bd410) HNHc 0.941	20708 MPP_ACP5 0.9317	269513 PTZ00461 0.9315	263178 (HCD1) NADB_Rossmann superfamily 0.9278	21240 hypothetical protein 0.9102	bd1841 (bd1841) CAP10 superfamily 0.9082
bd415 (bd415) arom_aa_hydroxylase superfamily 0.9067	31317 (UGDH2) Ugd 0.9031	23779 hypothetical protein 0.8965	25895 hypothetical protein 0.8916

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GCD		Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,...	cl09933	664.057	0	75 - 462	specific	173840
ACAD superfamily		Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA...	-	664.057	0	75 - 462	superfamily	263927
CaiA		Acyl-CoA dehydrogenases [Lipid metabolism]	-	326.381	4.00E-107	87 - 462	multi-dom	224871

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36201	PHATR_25572	PHATR_25572	278838	299641	Not available	Cre16.g695100.t1.1	AT3G51840.1	353847

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0003995 GO:0006118 GO:0016491 GO:0004361 -

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