269513 PTZ00461
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269513 chr_10 PTZ00461 623901 625735 + PTZ00461

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0404

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0126
 0.34

Most Highly Correlated Transcripts

bd410

(bd410) HNHc
0.9358

23830

(GCD1) GCD
0.9315

28651

(AAT1_1) PLN02644
0.9235

263178

(HCD1) NADB_Rossmann superfamily
0.918

3260

hypothetical protein
0.914

20708

MPP_ACP5
0.9133

32789

(PCC1) COG4799
0.9124

25495

ALDH_F6_MMSDH
0.9122

32067

PTZ00182
0.9074

1218

Aa_trans superfamily
0.8951

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACAD superfamily Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA... - 378.677 4.85E-128 57 - 438 superfamily 263927
PTZ00461 isovaleryl-CoA dehydrogenase; Provisional - 402.393 8.02E-137 23 - 438 multi-dom 185640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22019 PHATRDRAFT_22019 278364 236454 435778 Cre06.g296400.t1.2 AT3G45300.1 553331

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003995 GO:0006118 GO:0016491 GO:0016937 GO:0017099 GO:0019109 -

GO:0003995

acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016937

short-branched-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue.
GO Category: 
MF

GO:0017099

very-long-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
GO Category: 
MF

GO:0019109

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments