24163 PLN02788
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24163 chr_10 PLN02788 467906 469317 - PLN02788

Synonyms

NCBI ID Ensembl Genomes exon ID
7451097 Thaps24163.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

ThpsCp097

(rpl23) ribosomal protein L23
0.9185

ThpsCp108

(rpl5) ribosomal protein L5
0.9129

ThpsCp096

(rpl4) ribosomal protein L4
0.9081

ThpsCp134

(rpl34) ribosomal protein L34
0.9074

ThpsCp098

(rpl2) ribosomal protein L2
0.9025

6610

hypothetical protein
0.898

ThpsCp110

(rpl6) ribosomal protein L6
0.8969

ThpsCp103

(rpl16) ribosomal protein L16
0.8958

ThpsCp099

(rps19) ribosomal protein S19
0.8873

ThpsCp106

(rpl14) ribosomal protein L14
0.8863

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II... cl00268 269.8 5.28E-88 110 - 343 specific 238277
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 269.8 5.28E-88 110 - 343 superfamily 260313
FDX-ACB Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some... cl08386 112.904 2.34E-30 360 - 450 specific 214893
FDX-ACB superfamily Ferredoxin-fold anticodon binding domain; This is the anticodon binding domain found in some... - 112.904 2.34E-30 360 - 450 superfamily 263619
PLN02788 phenylalanine-tRNA synthetase - 709.609 0 47 - 450 multi-dom 215422

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54597 PHATRDRAFT_54597 Not available Not available 453508 Cre02.g079600.t1.2 AT3G58140.1 326460

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0005215 GO:0006810 GO:0004826 GO:0005524 GO:0006432 GO:0005737 GO:0004812 GO:0006418 GO:0009328 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0004826

phenylalanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006432

phenylalanyl-tRNA aminoacylation

Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0009328

phenylalanine-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).
GO Category: 
CC

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