24626 RING
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24626 chr_13 RING 306815 308904 + RING

Synonyms

NCBI ID Ensembl Genomes exon ID
7453006 Thaps24626.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0121

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0060
 0.47

Most Highly Correlated Transcripts

bd690

(bd690) NA
0.9397

bd738

(bd738) NA
0.9269

bd1801

(bd1801) NA
0.9264

bd1934

(bd1934) NA
0.9244

bd1813

(bd1813) NA
0.9242

bd877

(bd877) NA
0.9043

bd1840

(bd1840) NA
0.8752

bd1946

(bd1946) NA
0.855

bd643

(bd643) NA
0.8476

bd737

(bd737) NA
0.8423

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 61.3076 4.93E-12 146 - 192 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 61.3076 4.93E-12 146 - 192 superfamily 266579

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre13.g592100.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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