24666 NUC superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24666 chr_13 NUC superfamily 511130 512312 + NUC superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445772 Thaps24666.1, Thaps24666.3, Thaps24666.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0045

Most Highly Correlated Transcripts

261470

Transcrip_reg superfamily
0.8939

9462

hypothetical protein
0.8855

25509

hypothetical protein
0.8841

24583

Nitro_FMN_reductase superfamily
0.8813

13448

Sec1
0.8786

5641

hypothetical protein
0.8754

261863

GlcNAc superfamily
0.875

7921

MinC_C superfamily
0.8686

36263

amt
0.8673

5066

hypothetical protein
0.8669

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NUC superfamily DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and... - 145.196 1.94E-41 64 - 302 superfamily 260185

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29606 PHATRDRAFT_29606 161880 295350 Not available Cre08.g362750.t1.2 Not available 477390

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004519 GO:0016893 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004519

endonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO Category: 
MF

GO:0016893

endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks to yield 5'-phosphomonoesters.
GO Category: 
MF

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