24712 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24712 chr_13 SrmB 824895 832532 - SrmB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0211
 0.43

Most Highly Correlated Transcripts

21222

SrmB
0.9171

bd1667

(bd1667) Mpp10
0.9159

34027

SrmB
0.9146

25120

U3_assoc_6 superfamily
0.9134

23900

hypothetical protein
0.9133

268130

hypothetical protein
0.8978

29018

NMD3
0.8973

25129

hypothetical protein
0.8959

23650

hypothetical protein
0.8957

32414

PRK00093
0.8941

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 96.538 1.95E-22 1920 - 2083 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 96.538 1.95E-22 1920 - 2083 superfamily 238034
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 169.588 7.55E-47 1634 - 1875 superfamily 266587
AAA_16 AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA... cl18944 90.2145 5.55E-20 347 - 537 specific 257559
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 90.2145 5.55E-20 347 - 537 superfamily 267297
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 61.6613 3.86E-11 2187 - 2235 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 61.6613 3.86E-11 2187 - 2235 superfamily 258212
COG3899 Predicted ATPase [General function prediction only] - 246.541 3.89E-67 347 - 1218 multi-dom 226415
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 248.937 1.47E-70 1625 - 2106 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14161 PHATRDRAFT_14161 137578 250695 Not available Not available AT2G40700.1 477816

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

GO:0004787

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

GO:0008722

NA

Details: 
NA
GO Category: 
NA

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

GO:0008828

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF

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