10935 Ion_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10935 chr_18 Ion_trans 485268 487067 - Ion_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7444782 Thaps10935.3, Thaps10935.1, Thaps10935.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0057
 0.46

Most Highly Correlated Transcripts

1316

hypothetical protein
0.8794

21238

(ALD3) ALDH_F3-13-14_CALDH-like
0.8749

20821

SCP superfamily
0.8729

21606

plant_peroxidase_like superfamily
0.8655

260761

HA
0.8588

23813

hypothetical protein
0.8485

21308

RING
0.8464

263035

HP_PGM_like
0.8463

23770

hypothetical protein
0.8452

5161

hypothetical protein
0.8382

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 70.0091 6.06E-14 73 - 297 multi-dom 249927

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 215540 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005267 GO:0006813 GO:0016020 GO:0005249 GO:0005261 GO:0006812 GO:0005216 GO:0006811 -

GO:0005267

potassium channel activity

Details: 
Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006813

potassium ion transport

Details: 
The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005249

voltage-gated potassium channel activity

Details: 
Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO Category: 
MF

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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