24936 Transglut_coreThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24936	chr_14	Transglut_core	908343	912410	+	Transglut_core

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441837	Thaps24936.5, Thaps24936.4, Thaps24936.1, Thaps24936.3, Thaps24936.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0036

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0038	0.59	0.00078 5.2

Most Highly Correlated Transcripts

22883 hypothetical protein 0.8649	5660 hypothetical protein 0.8559	22898 hypothetical protein 0.8429	5743 BTB 0.8395	34590 nt_trans superfamily 0.8384	9373 hypothetical protein 0.835
23707 SYLF superfamily 0.8332	5840 hypothetical protein 0.8273	23940 hypothetical protein 0.8266	8130 hypothetical protein 0.8264

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Transglut_core		Transglutaminase-like superfamily; This family includes animal transglutaminases and other...	cl17362	68.9894	1.06E-13	905 - 983	specific	250908
Transglut_core superfamily		Transglutaminase-like superfamily; This family includes animal transglutaminases and other...	-	68.9894	1.06E-13	905 - 983	superfamily	266651

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50113	PHATRDRAFT_50113	256321	Not available	106227	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006508 GO:0008237 GO:0008270 GO:0031177 -

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