25135 DENN superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25135	chr_16a	DENN superfamily	268533	275495	-	DENN superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442520	Thaps25135.7, Thaps25135.4, Thaps25135.6, Thaps25135.1, Thaps25135.5, Thaps25135.3, Thaps25135.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0248

Most Highly Correlated Transcripts

263610 COG3899 0.8897	24063 COG3899 0.8896	20796 Sec23_helical 0.8836	4047 hypothetical protein 0.8835	8979 hypothetical protein 0.8792	8762 SNF2_N 0.8723
21695 hypothetical protein 0.8723	5904 NhaP 0.8708	23031 hypothetical protein 0.87	24335 hypothetical protein 0.8674

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DENN superfamily		DENN (AEX-3) domain; DENN (after differentially expressed in neoplastic vs normal cells) is a...	-	120.36	3.44E-30	940 - 1132	superfamily	264408
dDENN		dDENN domain; This region is always found associated with pfam02141. It is predicted to form a...	cl04084	63.7681	6.84E-12	1212 - 1282	specific	251966
dDENN superfamily		dDENN domain; This region is always found associated with pfam02141. It is predicted to form a...	-	63.7681	6.84E-12	1212 - 1282	superfamily	262010

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	264916	209578	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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