25179 (Tp_CCH7) COG5152Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25179	chr_16b	(Tp_CCH7) COG5152	41319	42567	+	COG5152

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442598	Thaps25179.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0113

Most Highly Correlated Transcripts

261400 NA 0.9062	6052 Nop superfamily 0.8953	2145 hypothetical protein 0.8945	34018 RPN7 0.8897	22097 hypothetical protein 0.8842	1674 hypothetical protein 0.8838
9462 hypothetical protein 0.8838	5519 hypothetical protein 0.8826	24635 hypothetical protein 0.8818	1470 hypothetical protein 0.8799

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG5152		Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function...	-	133.662	2.25E-36	92 - 349	multi-dom	227481

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12516	PHATRDRAFT_12516	197304	153171	194091	Cre06.g254650.t1.2	AT1G01350.1	566581

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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