25297 Chorein_NThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25297	chr_17	Chorein_N	503494	514152	-	Chorein_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453076	Thaps25297.7, Thaps25297.4, Thaps25297.2, Thaps25297.5, Thaps25297.1, Thaps25297.8, Thaps25297.6, Thaps25297.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0194

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0247	0.36	2.5 17

Most Highly Correlated Transcripts

263610 COG3899 0.9274	25073 hypothetical protein 0.9136	5574 SufI 0.9008	25498 E3_UbLigase_R4 superfamily 0.8953	25168 hypothetical protein 0.8915	25600 hypothetical protein 0.8902
24529 hypothetical protein 0.886	22922 hypothetical protein 0.8848	7584 pepsin_like 0.8838	24035 Peptidase_C19 superfamily 0.883

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chorein_N superfamily		N-terminal region of Chorein, a TM vesicle-mediated sorter; Although mutations in the full-length...	-	78.7497	2.65E-16	3 - 125	superfamily	257171
Chorein_N superfamily		N-terminal region of Chorein, a TM vesicle-mediated sorter; Although mutations in the full-length...	-	78.7497	2.65E-16	3 - 125	superfamily	257171

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	211848	Not available	451837	Cre12.g483500.t1.1	AT4G17140.1	315602

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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