25486 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25486 chr_19a_19 PseudoU_synth_RluCD_like 432012 434610 - PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7444318 Thaps25486.1, Thaps25486.2, Thaps25486.4, Thaps25486.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0254
 0.29

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9603

264188

COG1026
0.8664

2128

hypothetical protein
0.8299

262858

(IKI3) IKI3
0.8019

263669

UvrD
0.8014

34412

Clp1 superfamily
0.7968

7453

SpoU_methylase superfamily
0.7904

22685

COG2520
0.7894

5794

hypothetical protein
0.7884

268352

P-ATPase-V
0.7853

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 92.4004 2.78E-21 273 - 591 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 92.4004 2.78E-21 273 - 591 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46577 PHATRDRAFT_46577 233938 15935 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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