34412 Clp1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34412	chr_5	Clp1 superfamily	1481206	1483848	-	Clp1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448145	Thaps34412.2, Thaps34412.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0232

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0254	0.29	0.55 55

Most Highly Correlated Transcripts

8503 DUF2431 0.874	262858 (IKI3) IKI3 0.8721	22801 hypothetical protein 0.8629	5694 hypothetical protein 0.855	12259 COG1204 0.8504	1693 hypothetical protein 0.8423
20800 XRN_N superfamily 0.84	262303 (Helicase_2) UvrD-helicase 0.8392	42543 2OG-FeII_Oxy_2 0.8354	24216 hypothetical protein 0.8327

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Clp1 superfamily		Pre-mRNA cleavage complex II protein Clp1; This family consists of several pre-mRNA cleavage...	-	69.249	1.89E-13	559 - 819	superfamily	253921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48855	PHATRDRAFT_48855	154325	164037	Not available	Not available	AT5G11010.3	533258

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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