2552 DUS_like_FMN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2552 chr_2 DUS_like_FMN 1271028 1272201 + DUS_like_FMN

Synonyms

NCBI ID Ensembl Genomes exon ID
7450402 Thaps2552.2, Thaps2552.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0492

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

13448

Sec1
0.8722

12899

AAA
0.8651

bd460

(bd460) folC
0.8521

12836

EEP superfamily
0.846

262422

DEXDc
0.8404

16295

FBPase
0.8325

1906

hypothetical protein
0.831

2909

DnaQ_like_exo superfamily
0.8173

32782

MPN superfamily
0.8155

6532

Eapp_C superfamily
0.8151

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the... cl17186 183.079 1.56E-55 11 - 254 specific 239200
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 183.079 1.56E-55 11 - 254 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17115 PHATRDRAFT_17115 204987 176692 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008033 GO:0016491 GO:0050660 GO:0051341 -

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0051341

regulation of oxidoreductase activity

Details: 
Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
BP

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