25605 (trpAB) Trp-synth_B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25605 chr_20 (trpAB) Trp-synth_B 232930 236021 - Trp-synth_B

Synonyms

NCBI ID Ensembl Genomes exon ID
7448510 Thaps25605.3, Thaps25605.2, Thaps25605.4, Thaps25605.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0052

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0066
 0.42

Most Highly Correlated Transcripts

38964

Chorismate_synthase
0.9001

9247

hypothetical protein
0.8952

4524

DHQS
0.8772

268062

PRK14293
0.8673

262977

NA
0.863

20983

DUF760
0.8527

13393

PLN02321
0.8513

25508

hypothetical protein
0.8511

9049

hypothetical protein
0.8507

26957

Sec63
0.8494

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two... cl00342 655.76 0 313 - 674 specific 107207
Trp-synth-beta_II superfamily Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-... - 655.76 0 313 - 674 superfamily 260370
Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha... cl17186 334.83 5.25E-110 29 - 273 specific 240075
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 334.83 5.25E-110 29 - 273 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41702 PHATRDRAFT_41702 230141 240357 427526 Cre03.g161400.t1.2 AT5G54810.1 564117

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0004834 GO:0006568 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004834

tryptophan synthase activity

Details: 
Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
GO Category: 
MF

GO:0006568

tryptophan metabolic process

Details: 
The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
GO Category: 
BP

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