25686 SmcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25686	chr_22	Smc	96837	103993	+	Smc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443668	Thaps25686.4, Thaps25686.3, Thaps25686.1, Thaps25686.5, Thaps25686.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0119

Most Highly Correlated Transcripts

25687 TPR_MLP1_2 0.9502	25451 AAA superfamily 0.9215	23207 hypothetical protein 0.9192	24035 Peptidase_C19 superfamily 0.905	22922 hypothetical protein 0.9025	24618 hypothetical protein 0.9018
7261 hypothetical protein 0.9009	24331 (Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily 0.8992	25356 DUF1325 superfamily 0.8927	7584 pepsin_like 0.8913

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR_MLP1_2		TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human...	-	79.2623	1.57E-16	1247 - 1378	multi-dom	254520
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	85.1511	1.36E-16	347 - 1188	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0008570 -

Add comment

Log in to post comments