25687 TPR_MLP1_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25687	chr_22	TPR_MLP1_2	116285	123473	+	TPR_MLP1_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449477	Thaps25687.1, Thaps25687.5, Thaps25687.4, Thaps25687.2, Thaps25687.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0119

Most Highly Correlated Transcripts

25686 Smc 0.9502	21248 RRM 0.8892	22922 hypothetical protein 0.8874	24035 Peptidase_C19 superfamily 0.8859	7584 pepsin_like 0.8822	25297 Chorein_N 0.8819
5780 hypothetical protein 0.8771	4672 hypothetical protein 0.8725	5273 DUF221 superfamily 0.8666	25600 hypothetical protein 0.8652

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR_MLP1_2		TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human...	-	81.1883	3.22E-17	1247 - 1378	multi-dom	254520
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	83.6103	4.15E-16	347 - 1188	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35556	PHATRDRAFT_35556	Not available	180661	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0008570 -

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