25869 Nrap superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25869	chr_23	Nrap superfamily	379824	384828	-	Nrap superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442684	Thaps25869.3, Thaps25869.1, Thaps25869.4, Thaps25869.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0229

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0272	0.25	4.6 32

Most Highly Correlated Transcripts

13578 SrmB 0.916	21462 (rpoT) rpot-like RNA polymerase 0.9068	268688 hypothetical protein 0.8941	21375 hypothetical protein 0.8887	262722 DEXDc superfamily 0.8864	bd1945 (bd1945) NA 0.8797
268252 Utp21 superfamily 0.8753	23175 hypothetical protein 0.8722	36609 PRK00142 0.8717	8336 hypothetical protein 0.8713

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nrap superfamily		Nrap protein; Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly...	-	349.66	8.49E-102	221 - 1504	superfamily	252180

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_bd1637	PHATRDRAFT_bd1637	169243	183925	Not available	Cre07.g332800.t1.2	AT1G63810.1	314104

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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