260749 CHAT superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260749	chr_1	CHAT superfamily	96904	99217	-	CHAT superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442914	Thaps260749.3, Thaps260749.1, Thaps260749.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0084

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0016	0.55	11 12

Most Highly Correlated Transcripts

36007 Aldolase_II superfamily 0.9206	269925 AAA_12 superfamily 0.8841	264598 AAA 0.8749	38472 HA2 0.8731	30701 PRK05279 0.8729	24525 hypothetical protein 0.8665
11208 MPP_superfamily superfamily 0.8665	7929 hypothetical protein 0.866	10498 hypothetical protein 0.8602	37497 cysE 0.8542

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CHAT superfamily		CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes...	-	177.191	3.48E-49	226 - 651	superfamily	267601

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48451	PHATRDRAFT_48451	178623	259268	451944	Cre01.g029200.t1.1	AT4G22970.2	471658

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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