260819 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260819 chr_1 WD40 722641 724605 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7453445 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0168

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0050
 0.45

Most Highly Correlated Transcripts

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.8768

bd616

(bd616) NA
0.8431

34237

Motor_domain superfamily
0.7806

bd835

(bd835) DUF4137
0.7547

5351

hypothetical protein
0.7434

269325

(Tp_HSF_2.6c) HSF
0.7427

bd1835

(bd1835) NA
0.7402

23665

(HSF7) HSF
0.7398

1308

ANK
0.708

3784

hypothetical protein
0.7068

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 71.9824 3.30E-14 71 - 461 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 71.9824 3.30E-14 71 - 461 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 71.9824 3.30E-14 71 - 461 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 134.061 6.16E-34 207 - 591 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 198242 Cre12.g489750.t1.2 Not available 333668

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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