260862 GrpE superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260862 chr_1 GrpE superfamily 984637 985485 - GrpE superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445647 Thaps260862.2, Thaps260862.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0312

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

bd381

(bd381) NA
0.8197

bd196

(bd196) Snf7 superfamily
0.818

9247

hypothetical protein
0.7708

bd1877

(bd1877) NA
0.7706

35164

acolac_lg
0.7696

bd524

(bd524) NA
0.767

269240

(dnaK) dnaK
0.7597

10724

Ank_2
0.7446

40200

TRX_reduct
0.7407

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7296

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GrpE superfamily GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds... - 78.5259 6.98E-18 59 - 226 superfamily 261574

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1725 PHATRDRAFT_bd1725 274772 246239 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000774 GO:0006457 GO:0042803 GO:0051087 -

GO:0000774

adenyl-nucleotide exchange factor activity

Details: 
Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins.
GO Category: 
MF

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0042803

protein homodimerization activity

Details: 
Interacting selectively and non-covalently with an identical protein to form a homodimer.
GO Category: 
MF

GO:0051087

chaperone binding

Details: 
Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
GO Category: 
MF

Add comment

Log in to post comments